I have bits of software related to my work available on my github.
Software used in publications
Quantification of subclonal selection in cancer from bulk sequencing data
See here for a post detailing some of the software I developed for this paper.
Identification of neutral tumour evolution across cancer types
In this paper we showed that sequencing data from a large proportion of cancers fitted a neutral evolution model. As part of this work we used a simulation of cancer evolution. A jupyter notebook showing the results of the simulation is available here.