Software

I have bits of software related to my work available on my github.

Software used in publications

Quantification of subclonal selection in cancer from bulk sequencing data

See here for a post detailing some of the software I developed for this paper.

Identification of neutral tumour evolution across cancer types

In this paper we showed that sequencing data from a large proportion of cancers fitted a neutral evolution model. As part of this work we used a simulation of cancer evolution. A jupyter notebook showing the results of the simulation is available here.